Package: winn 0.1.5

Tanmay Tanna
winn: White Noise Normalization for Mass Spectrometry Profiling Data
Provides a decision-guided workflow for correcting technical variability in chemical profiling data. Tests for white noise identify measured features that need correction while preserving those that already pass. The workflow combines robust outlier adjustment, adaptive drift detection, change-point segmentation, batch correction, and probabilistic quotient normalization in a single pipeline or as modular steps. It supports parameter tuning using pooled quality-control samples as well as operation for studies without pooled controls.
Authors:
winn_0.1.5.tar.gz
winn_0.1.5.zip(r-4.7-any)winn_0.1.5.zip(r-4.6-any)winn_0.1.5.zip(r-4.5-any)
winn_0.1.5.tgz(r-4.6-any)winn_0.1.5.tgz(r-4.5-any)
winn_0.1.5.tar.gz(r-4.7-any)winn_0.1.5.tar.gz(r-4.6-any)
winn_0.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
winn/json (API)
| # Install 'winn' in R: |
| install.packages('winn', repos = c('https://ratschlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ratschlab/winn/issues
Last updated from:f555ef3b97. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 164 | ||
| source / vignettes | OK | 221 | ||
| linux-release | OK | 158 | ||
| macos-release | OK | 183 | ||
| macos-oldrel | OK | 190 | ||
| windows-devel | OK | 95 | ||
| windows-release | OK | 88 | ||
| windows-oldrel | OK | 96 | ||
| wasm-release | OK | 147 |
Exports:adjust_outliers_madanova_batch_correctionautocorrelation_correctcombat_batch_correctionnormalize_by_dilution_factorscale_by_batchwinnwinn_ablation
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Adjust Outliers in Data Matrix Using MAD | adjust_outliers_mad |
| Perform ANOVA-based Mean-Only Batch Correction | anova_batch_correction |
| Correct for Drift in Data Using Autocorrelation Correction | autocorrelation_correct |
| Perform ComBat Batch Correction by batch | combat_batch_correction |
| Normalize Data Matrix by Dilution Factor | normalize_by_dilution_factor |
| Scale Data by batch | scale_by_batch |
| Winn Correction for Metabolomics Data | winn |
| Run WiNN as Explicit Ablation Stages | winn_ablation |